My LTFT are always betwen -8 and -4. STFT bounces around. I just need some direction as to what might have failed/be going bad. My car has always run at 14.7 to 14.59 at idle. Now it's down to 13.79 at idle. It does go lower during WOT, but it's never gone below CAFR of 12.8 at WOT...now it's down to the 11's. And my FCO has always been 29.4...now its 27.58 commanded AFR. Furthermore, I'm getting missfires on 1,2, and 4 but not 3. It doesn't happen all the time... And they usually will clear themselves before the next one happens. I've got a feeling the vibration that I have 1k rpm is from this issue because it gets really rich then. And I'd like to solve it if I can!! I just don't know why my commanded AFR has dropped so bad. My car is still a rocket...still pulls hard up to 6k...still gets 22psi of boost....
Do you have feedback for the actual Commanded AFR? During normal operating conditions it will be commanding stoich no matter what fuel you're running (E10 to E85). Also note that the LTFT will be different for every load point including idle, make sure to double check the LTFT while experiencing the rich AFR, LTFT is not global to describe the whole calibration picture. If the LTFT is closer to zero than (-)20 in all areas, then I would agree the 'Commanded AFR' is commanding it to be rich intentionally.
Looks like you said this is the GXP with the LNF, my understanding is this uses a WBO2 sensor, so it would indeed be capable of commanding a richer AFR while in closed loop (idle, cruise, low load). Off the top of my head, what would cause the tune to want a rich mixture? Maybe go through all of your temperatures during the rich condition to see if something is way off, like IAT shows 300F at idle.
For the misfire, I would at least pull your plugs (trust no one) and check your gap. I have been running copper plugs with a 0.028 gap in my LE5, anything larger would cause misfiring/blowout under high load high rpm. Is this when you are getting the misfiring, do you feel torque drops under WOT pulls? However, excessively rich also causes misfires so it could be related to your fueling problem.