So I decided to bite the bullet and just got the upgraded Trifecta custom tune to get them to really look at my datalogs. They did find something that they said they have never seen before.
Esentially, ONLY above 5,000rpms my spark advance intermittently goes from 12 advance to 6 advance back up to 12. It's obviously not what the tune is commanding and they are having issues determining why it's happening. FYI it was happening before the tune with Trifecta so I know it's not that.
Well, they were stumped until I told them that after I got the P0107 code with my MAP sensor the hesitation went away. They think it's related to the MAP sensor (even though it wasn't throwing a code prior).
They recommended I go with the 3-bar sensor, but I'm hesitant to spend the money if it doesn't fix the problem. I'm already dropping $3,000 for the rear diff replacement.